Validation Results for NCPIFHIRImplementationGuide

Generated Mon Nov 28 20:42:47 UTC 2022, FHIR version 4.0.1 for NCPI-FHIR-Implementation-Guide#0.2.0 (canonical = https://nih-ncpi.github.io/ncpi-fhir-ig (history)). See Errors Only

Quality Checks
Publisher Version:IG Publisher Version: v1.2.19
Publication Code:n/a . PackageId = NCPI-FHIR-Implementation-Guide, Canonical = https://nih-ncpi.github.io/ncpi-fhir-ig
Realm Check for n/a:
  • n/a
Publication Request:
  • This IG has never been published
  • This IG has never been published, so the version should start with 0.
  • No publication request found
Supressed Messages:No Suppressed Issues
Dependency Checks:
PackageVersionFHIRCanonicalWeb BaseComment
.. NCPI-FHIR-Implementation-Guide0.2.0R4https://nih-ncpi.github.io/ncpi-fhir-ig
... hl7.terminology.r45.0.0 MR4http://terminology.hl7.orghttp://terminology.hl7.org/5.0.0
... hl7.fhir.us.core3.1.1 OR4http://hl7.org/fhir/us/corehttp://hl7.org/fhir/us/core/STU3.1.1Latest Release is 5.0.1
Templates: fhir.base.template#0.2.2
Dependent IGs:no references
Global Profiles:(none declared)
HTA Analysis:Non-HL7 Igs are exempt from terminology dependency analysis
R5 Dependencies:(none)
Modifier Extensions:(none)
Previous Version Comparison: Unable to compare with previous version: Unable to find version history at https://nih-ncpi.github.io/ncpi-fhir-ig (Problem #1 with package-list.json at https://nih-ncpi.github.io/ncpi-fhir-ig: Invalid HTTP response 404 from https://nih-ncpi.github.io/ncpi-fhir-ig/package-list.json?nocache=1669668103100 (Not Found) (content in /tmp/fhir-http-2.log))
IPA Comparison: n/a
Summary: errors = 22, warn = 50, info = 26, broken links = 15
FilenameErrorsWarningsHints
Build Errors1540
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1011
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ConditionInheritanceMode021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1021
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo212
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi011
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-data-types011
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes310
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs211
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Condition-disease-example-1010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Condition-phenotype-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DiagnosticReport-diagnostic-report-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DocumentReference-drs-document-reference-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/DocumentReference-research-document-reference-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Encounter-example-encounter-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Group-example-summary-group-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Group-ncpi-research-study-01-group-01-main000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide020
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-anvil-summary-cmg050
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-anvil-summary-phs0007110100
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-diagnostic-implication-1001
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-example-observation-data-row-1001
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-example-study-summary-gender003
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-family-relationship-example-4000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Observation-variant-example-1013
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-4000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-5000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Organization-organization-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-ncpi-research-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-ncpi-research-study-01-patient-02000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Patient-patient-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Practitioner-practitioner-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/PractitionerRole-practitioner-role-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Questionnaire-example-questionnaire-demographics-1100
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1202
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-ncpi-research-study-01010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-cmg010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchStudy-research-study-phs000711010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-example-3000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-01000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-02000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Specimen-specimen-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-disease000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-family-relationship000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-drs-attachment000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-drs-document-reference000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-research-document-reference000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-research-study001
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-ncpi-specimen-task000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-phenotype000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-raw-data-observation010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-data-dictionary-harmony000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-data-dictionary-table000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-data-dictionary-variable000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-group200
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-summary013
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-study-variable-summary003
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/StructureDefinition-supporting-info000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Task-task-example-1000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/Task-task-example-2000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-condition-inheritance-vs010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-datatable-mappings-valueset-1030
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-datatable-valueset-1010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-disease-codes000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-example-study-data-dictionary-case-control-vs-1030
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-loinc-answers000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-ncpi-vs010
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-phenotype-codes000
/home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes200

n/a Show Validation Information

output/Observation-example-observation-data-row-1.html#/html/body/div/div/div/div/div/div/p/a at Line 288, column 130errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "demographics" cannot be resolved
output/Observation-example-observation-data-row-1.html#/html/body/div/div/div/div/div/div/p/a at Line 288, column 389errorThe link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "CodeSystem" cannot be resolved
output/Observation-example-study-summary-gender.html#/html/body/div/div/div/div/div/div/p/a at Line 286, column 653errorThe link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "demographics-table" cannot be resolved
output/Questionnaire-example-questionnaire-demographics-1.html#/html/body/div/div/div/div/div/div/p/a at Line 311, column 98errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "Demographics CodeSystem" cannot be resolved
output/ValueSet-datatable-mappings-valueset-1.html#/html/body/div/div/div/div/div/div/ul/li/table/tr/td/a at Line 322, column 1106errorThe link 'CodeSystem-hpo.html#hpo-HP.580010772' for "HP:0010772" cannot be resolved (valid targets: 1893 targets)
output/ValueSet-datatable-mappings-valueset-1.html#/html/body/div/div/div/div/div/div/ul/li/table/tr/td/a at Line 322, column 1466errorThe link 'CodeSystem-mondo.html#mondo-0017705' for "0017705" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, segment-breadcrumb])
output/ValueSet-datatable-mappings-valueset-1.html#/html/body/div/div/div/div/div/div/ul/li/table/tr/td/a at Line 322, column 1592errorThe link 'CodeSystem-mondo.html#mondo-0007130' for "0007130" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, segment-breadcrumb])
output/ValueSet-datatable-valueset-1.html#/html/body/div/div/div/div/div/div/table/tr/td/a at Line 326, column 3412errorThe link 'CodeSystem-hpo.html#hpo-HP.580010772' for "HP:0010772" cannot be resolved (valid targets: 1893 targets)
output/ValueSet-datatable-valueset-1.html#/html/body/div/div/div/div/div/div/table/tr/td/a at Line 326, column 3511errorThe link 'CodeSystem-mondo.html#mondo-MONDO.580017705' for "MONDO:0017705" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, segment-breadcrumb])
output/ValueSet-datatable-valueset-1.html#/html/body/div/div/div/div/div/div/table/tr/td/a at Line 326, column 3620errorThe link 'CodeSystem-mondo.html#mondo-MONDO.580007130' for "MONDO:0007130" cannot be resolved (valid targets: [mondo-MONDO.580008542, segment-header, publish-box, bottom, segment-post-footer, codesystem-mondo-disease-ontology, mondo-MONDO.580005072, ig-status, mondo-MONDO.580002749, top, root, stripe, segment-footer, segment-navbar, segment-content, segment-breadcrumb])
output/example_raw_data.html#/html/body/div/div/div/div/div/table/tbody/tr/td/a at Line 256, column 114errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "dataset CodeSystem" cannot be resolved
output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 266, column 329errorThe link 'ObservationDefinition-example-study-dd-variable-1-1.json.html' for "subjectid" cannot be resolved
output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 266, column 475errorThe link 'ObservationDefinition-example-study-dd-variable-1-2.json.html' for "gender" cannot be resolved
output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 281, column 569errorThe link 'CodeSystem-example-study-dd-dataset-codesystem-1.html' for "demographics" cannot be resolved
output/example_raw_data.html#/html/body/div/div/div/div/div/p/a at Line 281, column 868errorThe link 'CodeSystem-example-study-dd-datatable-codesystem-1.html' for "CodeSystem" cannot be resolved
1warningThe HTML fragment 'ip-statements.xhtml' is not included anywhere in the produced implementation guide
2warningAn HTML fragment from the set [cross-version-analysis.xhtml, cross-version-analysis-inline.xhtml] is not included anywhere in the produced implementation guide
3warningAn HTML fragment from the set [dependency-table.xhtml, dependency-table-short.xhtml] is not included anywhere in the produced implementation guide
4warningThe HTML fragment 'globals-table.xhtml' is not included anywhere in the produced implementation guide

fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1.json Show Validation Information (1)

PathSeverityMessage
ActivityDefinition.topic[0].coding[0]informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
ActivityDefinition.code.coding[0]warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics should be one of 0 choices from '', not 'Demographic data' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics'

fsh-generated/resources/CodeSystem-ConditionInheritanceMode.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

fsh-generated/resources/CodeSystem-hpo.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://purl.obolibrary.org/obo/hp.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSysteminformationReview the All Codes Value Set - incomplete CodeSystems generally should not have an all codes value set specified
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-hpoerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo vs http://purl.obolibrary.org/obo/hp.owl

fsh-generated/resources/CodeSystem-loinc-answers.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'ncpi:loinc-answers')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers) does not match the URL (ncpi:loinc-answers)
fsh-generated/resources/CodeSystem-loinc-answerserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers vs ncpi:loinc-answers

fsh-generated/resources/CodeSystem-mondo.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://purl.obolibrary.org/obo/mondo.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl)
fsh-generated/resources/CodeSystem-mondoerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo vs http://purl.obolibrary.org/obo/mondo.owl

fsh-generated/resources/CodeSystem-ncit.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://purl.obolibrary.org/obo/ncit.owl')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated/resources/CodeSystem-nciterrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit vs http://purl.obolibrary.org/obo/ncit.owl

fsh-generated/resources/CodeSystem-ncpi.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

fsh-generated/resources/CodeSystem-ncpi-data-types.json Show Validation Information (1)

PathSeverityMessage
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

fsh-generated/resources/CodeSystem-omim.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'https://omim.org/')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/)
fsh-generated/resources/CodeSystem-omimerrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim vs https://omim.org/

fsh-generated/resources/CodeSystem-tbd-codes.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes)
CodeSystemwarningHL7 Defined CodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemerrorThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not found. HL7 Published code systems SHALL conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-tbd-codeserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes vs http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes

fsh-generated/resources/CodeSystem-v3-hgvs.json Show Validation Information (1)

PathSeverityMessage
CodeSystem.where(url = 'http://varnomen.hgvs.org')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org)
CodeSysteminformationCodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly
CodeSystemwarningThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-v3-hgvserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs vs http://varnomen.hgvs.org

fsh-generated/resources/ConceptMap-example-study-data-dictionary-conceptmap-1.json Show Validation Information (1)

✓

fsh-generated/resources/Condition-disease-example-1.json Show Validation Information (1)

PathSeverityMessage
Condition.code.coding[0] (l42/c8)warningUnknown Code http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma in http://purl.obolibrary.org/obo/ncit.owl - note that the code system is labelled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma'

fsh-generated/resources/Condition-phenotype-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/DiagnosticReport-diagnostic-report-1.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-drs-document-reference-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/DocumentReference-research-document-reference-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Encounter-example-encounter-study-01-patient-01.json Show Validation Information (1)

✓

fsh-generated/resources/Group-example-summary-group-1.json Show Validation Information (1)

✓

fsh-generated/resources/Group-ncpi-research-study-01-group-01-main.json Show Validation Information (1)

✓

fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide.json Show Validation Information (0)

PathSeverityMessage
ImplementationGuide.definition.resource[7].descriptionwarningvalue should not start or finish with whitespace 'A...Task '
ImplementationGuide.definition.resource[12].descriptionwarningvalue should not start or finish with whitespace 'Grouping...etc. '

fsh-generated/resources/Observation-anvil-summary-cmg.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l7/c8)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary should be 'Summary Data', not 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
Observation.component[0].code.coding[0] (l23/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[1].code.coding[0] (l34/c12)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount should be 'Number of samples that are part of this study', not 'Number of Samples' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
Observation.component[2].code.coding[0] (l46/c12)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant should be 'Number of participants that are part of this study', not 'Number of Participants' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
Observation.component[3].code.coding[0] (l58/c12)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/Observation-anvil-summary-phs000711.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l7/c8)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary should be 'Summary Data', not 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
Observation.component[0].code.coding[0] (l23/c12)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount should be 'Number of samples that are part of this study', not 'Number of Samples' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
Observation.component[1].code.coding[0] (l35/c12)warningDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant should be 'Number of participants that are part of this study', not 'Number of Participants' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
Observation.component[2].code.coding[0] (l47/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[3].code.coding[0] (l58/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[4].code.coding[0] (l69/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[5].code.coding[0] (l80/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[6].code.coding[0] (l91/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[7].code.coding[0] (l101/c12)warningA code with no system has no defined meaning. A system should be provided
Observation.component[8].code.coding[0] (l111/c12)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/Observation-diagnostic-implication-1.json Show Validation Information (1)

PathSeverityMessage
Observation.component[0].value.ofType(CodeableConcept).coding[0] (l42/c12)informationCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/condition-inheritance-vs' is unknown so the code cannot be validated

fsh-generated/resources/Observation-example-observation-data-row-1.json Show Validation Information (1)

PathSeverityMessage
Observation.component[3].value.ofType(CodeableConcept).coding[0] (l77/c12)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated

fsh-generated/resources/Observation-example-study-summary-gender.json Show Validation Information (1)

PathSeverityMessage
Observation.code.coding[0] (l12/c8)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
Observation.value.ofType(CodeableConcept).coding[0] (l21/c8)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
Observation.component[2].code.coding[0] (l66/c12)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated

fsh-generated/resources/Observation-family-relationship-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-family-relationship-example-2.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-family-relationship-example-3.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-family-relationship-example-4.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-variant-example-1.json Show Validation Information (1)

PathSeverityMessage
Observation.component[0].value.ofType(CodeableConcept).coding[0] (l59/c12)informationCode System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated
Observation.component[1].value.ofType(CodeableConcept).coding[0] (l79/c12)informationCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/loinc-answers' is unknown so the code cannot be validated
Observation.component[7].value.ofType(CodeableConcept).coding[0] (l182/c12)informationCode System URI 'http://www.ncbi.nlm.nih.gov/refseq' is unknown so the code cannot be validated
Observation.component[8].value.ofType(CodeableConcept).coding[0] (l202/c12)warningLocal Error: Resolved system http://varnomen.hgvs.org (v2.0.1), but the definition is not complete. Server Error: Error from server: Error parsing JSON source: Unexpected char "<" in json stream at Line 0 (path=[]) (see Tx log)

fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-1.json Show Validation Information (1)

✓

fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-2.json Show Validation Information (1)

✓

fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-3.json Show Validation Information (1)

✓

fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-4.json Show Validation Information (1)

✓

fsh-generated/resources/ObservationDefinition-example-study-data-dictionary-variable-1-5.json Show Validation Information (1)

✓

fsh-generated/resources/Organization-organization-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-ncpi-research-study-01-patient-01.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-ncpi-research-study-01-patient-02.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-patient-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-patient-example-2.json Show Validation Information (1)

✓

fsh-generated/resources/Patient-patient-example-3.json Show Validation Information (1)

✓

fsh-generated/resources/Practitioner-practitioner-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/PractitionerRole-practitioner-role-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Questionnaire-example-questionnaire-demographics-1.json Show Validation Information (1)

PathSeverityMessage
Questionnaire.urlerrorResource id/url mismatch: example-questionnaire-demographics-1/https://nih-ncpi.github.io/ncpi-fhir-ig/data-dictionary/study-name/demographics

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.json Show Validation Information (1)

PathSeverityMessage
QuestionnaireResponse.subject (l8/c4)errorUnable to resolve resource with reference 'example-sum-patient-1'
QuestionnaireResponse.item[3].answer[0].value.ofType(Coding) (l48/c30)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
QuestionnaireResponse.item[1].answer[0] (l25/c10)informationCannot validate string answer option because no option list is provided
QuestionnaireResponse.item[3].answer[0] (l48/c30)errorThe value provided (https://uts.nlm.nih.gov/uts/umls::C99269) is not in the options value set in the questionnaire

fsh-generated/resources/ResearchStudy-ncpi-research-study-01.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy.primaryPurposeType.coding[0] (l24/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchStudy-research-study-cmg.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy.primaryPurposeType.coding[0] (l8/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchStudy-research-study-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchStudy-research-study-phs000711.json Show Validation Information (1)

PathSeverityMessage
ResearchStudy.primaryPurposeType.coding[0] (l8/c8)warningA code with no system has no defined meaning. A system should be provided

fsh-generated/resources/ResearchSubject-research-subject-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-example-2.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-example-3.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-01.json Show Validation Information (1)

✓

fsh-generated/resources/ResearchSubject-research-subject-study-01-patient-02.json Show Validation Information (1)

✓

fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01.json Show Validation Information (1)

PathSeverityMessage
Specimen.type.coding[0] (l7/c8)warningUnknown Code http://purl.obolibrary.org/obo/ncit.owl#C17610 in http://purl.obolibrary.org/obo/ncit.owl - note that the code system is labelled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#C17610'

fsh-generated/resources/Specimen-specimen-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-disease.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-family-relationship.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-drs-attachment.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-drs-document-reference.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-research-document-reference.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-ncpi-research-study.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.snapshot.element[19].pattern.ofType(Coding)informationThe repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users)

fsh-generated/resources/StructureDefinition-ncpi-specimen-task.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-phenotype.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-raw-data-observation.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.where(url = 'https://nih-ncpi.github.io/ncpi-fhir-ig/StructureDefinition/raw-data-observation')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-study-data-dictionary-harmony.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-study-data-dictionary-table.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-study-data-dictionary-variable.json Show Validation Information (1)

✓

fsh-generated/resources/StructureDefinition-study-group.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.snapshot.element[13].pattern.ofType(CodeableConcept).coding[0]errorLocal Error: Resolved system http://snomed.info/sct, but the definition is not complete. Server Error: Unable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982' (see Tx log)
StructureDefinition.differential.element[3].pattern.ofType(CodeableConcept).coding[0]errorLocal Error: Resolved system http://snomed.info/sct, but the definition is not complete. Server Error: Unable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982' (see Tx log)

fsh-generated/resources/StructureDefinition-study-summary.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.snapshot.element[17].pattern.ofType(Coding)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition.differential.element[1].pattern.ofType(Coding)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition.snapshot.element[17].pattern.ofType(Coding)informationThe repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users)
StructureDefinition.where(url = 'https://nih-ncpi.github.io/ncpi-fhir-ig/StructureDefinition/study-summary')warningThe Implementation Guide contains no examples for this profile

fsh-generated/resources/StructureDefinition-study-variable-summary.json Show Validation Information (1)

PathSeverityMessage
StructureDefinition.snapshot.element[17].pattern.ofType(Coding)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition.differential.element[1].pattern.ofType(Coding)informationCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
StructureDefinition.snapshot.element[17].pattern.ofType(Coding)informationThe repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users)

fsh-generated/resources/StructureDefinition-supporting-info.json Show Validation Information (1)

✓

fsh-generated/resources/Task-task-example-1.json Show Validation Information (1)

✓

fsh-generated/resources/Task-task-example-2.json Show Validation Information (1)

✓

fsh-generated/resources/ValueSet-condition-inheritance-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSetwarningThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile

fsh-generated/resources/ValueSet-datatable-mappings-valueset-1.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose[0].include[0]warningUnknown System 'https://uts.nlm.nih.gov/uts/umls' specified, so Concepts and Filters can't be checked (Details: Local Error: Unable to resolve system https://uts.nlm.nih.gov/uts/umls. Server Error: The code system 'https://uts.nlm.nih.gov/uts/umls' is not known (encountered paired with code = 'C2348584'); The code provided (https://uts.nlm.nih.gov/uts/umls#C2348584) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4))
ValueSetwarningThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile
ValueSet.where(id = 'datatable-mappings-valueset-1')warningError from server: Unable to provide support for code system https://uts.nlm.nih.gov/uts/umls (see Tx log)

fsh-generated/resources/ValueSet-datatable-valueset-1.json Show Validation Information (1)

PathSeverityMessage
ValueSetwarningThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile

fsh-generated/resources/ValueSet-disease-codes.json Show Validation Information (1)

✓

fsh-generated/resources/ValueSet-example-study-data-dictionary-case-control-vs-1.json Show Validation Information (1)

PathSeverityMessage
ValueSet.compose[0].include[0]warningUnknown System 'https://uts.nlm.nih.gov/uts/umls' specified, so Concepts and Filters can't be checked (Details: Code System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated)
ValueSetwarningThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile
ValueSet.where(id = 'example-study-data-dictionary-case-control-vs-1')warningError from server: Unable to provide support for code system https://uts.nlm.nih.gov/uts/umls (see Tx log)

fsh-generated/resources/ValueSet-loinc-answers.json Show Validation Information (1)

✓

fsh-generated/resources/ValueSet-ncpi-vs.json Show Validation Information (1)

PathSeverityMessage
ValueSetwarningThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile

fsh-generated/resources/ValueSet-phenotype-codes.json Show Validation Information (1)

✓

fsh-generated/resources/ValueSet-tbd-codes.json Show Validation Information (1)

PathSeverityMessage
ValueSet.where(url = 'http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes')errorConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes)
fsh-generated/resources/ValueSet-tbd-codeserrorURL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes vs http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes

Suppressed Messages (Warnings, hints, broken links)

No suppressed messsages

Errors sorted by type

CODESYSTEM_SHAREABLE_MISSING

fsh-generated/resources/CodeSystem-ConditionInheritanceMode.jsonThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ConditionInheritanceMode.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.jsonThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.jsonThe ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-hpo.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ncpi.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-ncpi-data-types.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile
fsh-generated/resources/CodeSystem-v3-hgvs.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile

CODESYSTEM_SHAREABLE_MISSING_HL7

fsh-generated/resources/CodeSystem-tbd-codes.jsonThe ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not found. HL7 Published code systems SHALL conform to the ShareableCodeSystem profile

Questionnaire_QR_Item_BadOption

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonThe value provided (https://uts.nlm.nih.gov/uts/umls::C99269) is not in the options value set in the questionnaire

Questionnaire_QR_Item_StringNoOptions

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonCannot validate string answer option because no option list is provided

RESOURCE_CANONICAL_MISMATCH

fsh-generated/resources/CodeSystem-hpo.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl)
fsh-generated/resources/CodeSystem-loinc-answers.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-loinc-answers.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/loinc-answers) does not match the URL (ncpi:loinc-answers)
fsh-generated/resources/CodeSystem-mondo.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl)
fsh-generated/resources/CodeSystem-ncit.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl)
fsh-generated/resources/CodeSystem-omim.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/)
fsh-generated/resources/CodeSystem-tbd-codes.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes)
fsh-generated/resources/CodeSystem-v3-hgvs.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org)
fsh-generated/resources/ValueSet-tbd-codes.jsonConformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes)

RESOURCE_ID_MISMATCH

fsh-generated/resources/Questionnaire-example-questionnaire-demographics-1.jsonResource id/url mismatch: example-questionnaire-demographics-1/https://nih-ncpi.github.io/ncpi-fhir-ig/data-dictionary/study-name/demographics

Reference_REF_CantResolve

fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonUnable to resolve resource with reference 'example-sum-patient-1'

TERMINOLOGY_TX_SYSTEM_NO_CODE

fsh-generated/resources/Observation-anvil-summary-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-ncpi-research-study-01.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-research-study-cmg.jsonA code with no system has no defined meaning. A system should be provided
fsh-generated/resources/ResearchStudy-research-study-phs000711.jsonA code with no system has no defined meaning. A system should be provided

Terminology_PassThrough_TX_Message

fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics should be one of 0 choices from '', not 'Demographic data' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/example-study-data-dictionary-dataset-codesystem-1#demographics'
fsh-generated/resources/Condition-disease-example-1.jsonUnknown Code http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma in http://purl.obolibrary.org/obo/ncit.owl - note that the code system is labelled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma'
fsh-generated/resources/Observation-anvil-summary-cmg.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary should be 'Summary Data', not 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
fsh-generated/resources/Observation-anvil-summary-cmg.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount should be 'Number of samples that are part of this study', not 'Number of Samples' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
fsh-generated/resources/Observation-anvil-summary-cmg.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant should be 'Number of participants that are part of this study', not 'Number of Participants' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary should be 'Summary Data', not 'Variable Summary' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary'
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount should be 'Number of samples that are part of this study', not 'Number of Samples' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount'
fsh-generated/resources/Observation-anvil-summary-phs000711.jsonDisplay Name for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant should be 'Number of participants that are part of this study', not 'Number of Participants' for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant'
fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01.jsonUnknown Code http://purl.obolibrary.org/obo/ncit.owl#C17610 in http://purl.obolibrary.org/obo/ncit.owl - note that the code system is labelled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#C17610'
fsh-generated/resources/StructureDefinition-study-group.jsonLocal Error: Resolved system http://snomed.info/sct, but the definition is not complete. Server Error: Unable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982'
fsh-generated/resources/StructureDefinition-study-group.jsonLocal Error: Resolved system http://snomed.info/sct, but the definition is not complete. Server Error: Unable to find code 44807982 in http://snomed.info/sct (version http://snomed.info/sct/900000000000207008/version/20220731); The code "44807982" is not valid in the system http://snomed.info/sct; The code provided (http://snomed.info/sct#44807982) is not valid in the value set 'All codes known to the system' (from http://tx.fhir.org/r4) for 'http://snomed.info/sct#44807982'

Terminology_TX_System_NotKnown

fsh-generated/resources/ActivityDefinition-example-study-data-dictionary-table-1.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-diagnostic-implication-1.jsonCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/condition-inheritance-vs' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-observation-data-row-1.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-study-summary-gender.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-study-summary-gender.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-example-study-summary-gender.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'http://fhir.ncpi-project-forge.io/ValueSet/loinc-answers' is unknown so the code cannot be validated
fsh-generated/resources/Observation-variant-example-1.jsonCode System URI 'http://www.ncbi.nlm.nih.gov/refseq' is unknown so the code cannot be validated
fsh-generated/resources/QuestionnaireResponse-example-questionnaire-demographics-response-1.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-variable-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated
fsh-generated/resources/StructureDefinition-study-variable-summary.jsonCode System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated

Type_Specific_Checks_DT_String_WS

fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide.jsonvalue should not start or finish with whitespace 'A...Task '
fsh-generated/resources/ImplementationGuide-NCPI-FHIR-Implementation-Guide.jsonvalue should not start or finish with whitespace 'Grouping...etc. '

VALUESET_SHAREABLE_MISSING

fsh-generated/resources/ValueSet-condition-inheritance-vs.jsonThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile
fsh-generated/resources/ValueSet-datatable-mappings-valueset-1.jsonThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile
fsh-generated/resources/ValueSet-datatable-valueset-1.jsonThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile
fsh-generated/resources/ValueSet-example-study-data-dictionary-case-control-vs-1.jsonThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile
fsh-generated/resources/ValueSet-ncpi-vs.jsonThe ShareableValueSet profile says that the experimental element is mandatory, but it is not present. Published value sets SHOULD conform to the ShareableValueSet profile